The Primary Information of Connexins and Pannexins

1. Summary

Gap junctions allow intracellular exchange by enabling the passage of small molecules less than 1.8 kDa in size, such as ions, small peptides, second messengers, and metabolites [1]. They are formed by the pairing of two hemichannels called connexons, said hemichannels are formed by hexameric assemblies of connexins (Cxs) that ultimately function to physically connect adjacent cells [2]. Cxs are named according to their molecular mass: in this way, a connexin (Cx) that has a molecular mass of 43 kDa is called Cx43 [3].

Cxs are structurally similar: they have 4 hydrophobic transmembrane domains (M1-M4), two extracellular loops, one cytoplasmic loop, and free cytosolic N- and C-termini. The extracellular loops work to connect to the Cxs of neighboring cells, while the N-terminal and the C-terminal have been associated with small molecule selectivity [4]. Most of the information known today about the molecular biology of Cxs has been derived from studies on Cx43. However, recently many gap junctions and hemichannels have been structurally characterized at high resolution using X-ray crystallography and cryo-EM, presenting insights into the shared structural similarities among Cxs [5].

Panx1, similar to its counterparts, has 4 transmembrane domains (M1-M4), cytosolic N- and C-termini, two extracellular loops and one intracellular loop. Until recently, Panx1 was thought to oligomerize as hexamers, but new cryo-EM structures have revealed the channels to be heptameric [6]. Panx1 can be activated by mechanical stretching, extracellular concentrations of K+, intracellular concentrations of Ca2+, opening of the P2X7 channel, tyrosine phosphorylation at the intracellular loop, or by membrane depolarization [5]. Some extracellular loops of Panx1 may exhibit glycosylation, which interestingly may be the reason for their lack of ability to form gap junctions, as demonstrated by glycosylation-deficient Panx channels. As for gating kinetics, a recent study demonstrated that the C-terminal tail acts as a gate, blocking the intracellular entry until its cleavage by caspase 3 or 7 opens the channel, suggesting a caspase-dependent gating mechanism [7].

2. Binding Sites

Inhibitor

In the 'CBX' binding site of pannexin-1, Arg75, Trp74 might form the hydrogen bond interactions [8].

Agonist

ATP, released through Panx1 channels, induces via activation of purinergic receptors (P2X7) further Panx1 channel opening, thereby increasing Panx1 activation [9]. PQ1 Succinate is a gap junction enhancer. It acts by restoring GJIC and increasing connexin expression in breast cancer cell lines while not affecting normal mammary cells [10].

3. Target List

ICDB_Pro ID Protein Name Organism Uniprot Accession Number Gene Name
ICDB_Pro_1064Gap junction alpha-3 protein Mus musculus (Mouse)Q64448Gja3
ICDB_Pro_1648Gap junction alpha-3 protein Ovis aries (Sheep)Q9TU17GJA3
ICDB_Pro_1722Gap junction alpha-3 protein Homo sapiens (Human)Q9Y6H8GJA3
ICDB_Pro_0038Gap junction alpha-4 protein Bos taurus (Bovine)A4IFL1GJA4
ICDB_Pro_0457Gap junction alpha-4 protein Mus musculus (Mouse)P28235Gja4; Cxn-37
ICDB_Pro_0492Gap junction alpha-4 protein Homo sapiens (Human)P35212GJA4
ICDB_Pro_0596Gap junction alpha-4 protein Xenopus laevis (African clawed frog)P51914gja4; cx41
ICDB_Pro_0753Gap junction alpha-4 protein Rattus norvegicus (Rat)Q03190Gja4; Cxn-37
ICDB_Pro_0807Gap junction alpha-4 protein Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)Q0V990gja4
ICDB_Pro_0888Gap junction alpha-4 protein Sus scrofa (Pig)Q29559GJA4